A 30‑Second Hack that Cleaned Up Our Blood DNA Preps on Manta

A 30‑Second Hack that Cleaned Up Our Blood DNA Preps on Manta

A 30‑Second Hack that Cleaned Up Our Blood DNA Preps on Manta

A new experiment for improving A260/230s further from baseline

Why we tried this                  

Freshly collected EDTA blood usually cruises through Manta’s Blood DNA cartridges with textbook 260/280 and 260/230 ratios (≈ 1.8–2.0). But every now and then a tougher specimen shows up: samples that sat overnight, hemolysed draws, or tubes that took the scenic route to the lab. Those “seasoned” inputs sometimes carry a little more ethanol into the elution, nudging the 260/230 down. Rather than overhaul the chemistry, we tested a tiny process tweak: parking the beads on the magnet for an extra 30 seconds before elution to let residual wash buffer flash off.

The quick‑and‑dirty experiment

Sample

Protocol

Avg Conc. (ng/µL)

Avg 260/280

Avg 260/230

%CV Conc.

1085

Standard

41.5

1.80

1.61

38.0 %

1085

+30 s dry

75.4

1.83

2.04

8.4 %

1086

Standard

69.5

1.88

2.10

14.1 %

1086

+30 s dry

77.7

1.89

2.28

10.4 %

Unsealed cartridge controls are excluded from the averages. All the data above is average of a larger sample set.

What we saw

  1. More DNA in the tube. Sample 1085 almost doubled (↗ 82 %). Sample 1086 got a modest 12 % bump.

  2. Cleaner ratios. 260/230 jumped from 1.61 → 2.04 (blood sample 1085) and 2.10 → 2.28 (1086). 260/280 nudged closer to the textbook 1.8‑1.9 range.

  3. Tighter reproducibility. Coefficient of variation on concentration crashed from 38 % to 8 % in the worst case.

So… does a 30‑second coffee break matter?

Apparently, yes. The extra half‑minute lets residual ethanol evaporate before elution, dragging fewer salts into the final pool. We expected nicer 260/230 values, but the jump in yield (especially on the lower‑input sample) was a pleasant surprise.

How we're rolling this out

✅Default in the Blood DNA (i4) protocol — the next Manta protocol release ships with the 30s magnet dry step baked in.

✅Firmware update— any Manta running our latest UI supports dwell‑on‑magnet commands. Earlier boxes will need a quick config push (takes ~2 min over Wi-Fi).

Got data of your own?

If you try the tweak, shoot your NanoDrop numbers to connect@cambrianbioworks.com — we'll fold community data into a living QC sheet.